Global Transcriptome Profiling of Xanthomonas oryzae pv. oryzae under in planta Growth and in vitro Culture Conditions
분야
농학 > 식물
저자
( So Eui Lee ) , ( Ravi Gupta ) , ( Ramesha H. Jayaramaiah ) , ( Seo Hyun Lee ) , ( Yiming Wang ) , ( Sang-ryeol Park ) , ( Sun Tae Kim )
발행기관
한국식물병리학회
간행물정보
The Plant Pathology Journal 2017년, 제33권 제5호, 458~466쪽(총9쪽)
파일형식
2w205344.pdf [무료 PDF 뷰어 다운로드]
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    영문초록
    Xanthomonas oryzae pv. oryzae (Xoo), the causative agent of bacterial blight, is a major threat to rice productivity. Here, we performed RNA-Seq based transcriptomic analysis of Xoo transcripts isolated under in planta growth (on both susceptible and resistant hosts) and in vitro culture conditions. Our in planta extraction method resulted in successful enrichment of Xoo cells and provided RNA samples of high quality. A total of 4,619 differentially expressed genes were identified between in planta and in vitro growth conditions. The majority of the differentially expressed genes identified under in planta growth conditions were related to the nutrient transport, protease activity, stress tolerance, and pathogenicity. Among them, over 1,300 differentially expressed genes were determined to be secretory, including 184 putative type III effectors that may be involved in Xoo pathogenicity. Expression pattern of some of these identified genes were further validated by semi-quantitative RT-PCR. Taken together, these results provide a transcriptome overview of Xoo under in planta and in vitro growth conditions with a focus on its pathogenic processes, deepening our understanding of the behavior and pathogenicity of Xoo.
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